IRTG2403 - Regulatory Genome

References

 

  • Ravasi, T., Suzuki, H., Cannistraci, C. V., Katayama, S., Bajic, V. B., Tan, K., ... & Carninci, P. (2010). An atlas of combinatorial transcriptional regulation in mouse and man. Cell, 140(5), 744-752.
  • Davidson, E. H. (2010). Emerging properties of animal gene regulatory networks. Nature, 468(7326), 911.
  • Farrell, J. A., Wang, Y., Riesenfeld, S. J., Shekhar, K., Regev, A., & Schier, A. F. (2018). Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science, 360(6392).
  • Wagner, A., Regev, A., & Yosef, N. (2016). Revealing the vectors of cellular identity with single-cell genomics. Nature biotechnology, 34(11), 1145.
  • Van de Sande, B., Flerin, C., Davie, K., De Waegeneer, M., Hulselmans, G., Aibar, S., ... & Aerts, S. (2020). A scalable SCENIC workflow for single-cell gene regulatory network analysis. Nature Protocols, 15(7), 2247-2276.
  • Holland, C. H., Tanevski, J., Perales-Patón, J., Gleixner, J., Kumar, M. P., Mereu, E., ... & Saez-Rodriguez, J. (2020). Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data. Genome biology, 21(1), 36.